RELA

NF-kappa-B is a ubiquitous transcription factor involved in several biological processes. It is held in the cytoplasm in an inactive state by specific inhibitors. Upon degradation of the inhibitor, NF-kappa-B moves to the nucleus and activates transcription of specific genes. NF-kappa-B is composed of NFKB1 or NFKB2 bound to either REL, RELA, or RELB. The most abundant form of NF-kappa-B is NFKB1 complexed with the product of this gene, RELA. Four transcript variants encoding different isoforms have been found for this gene. RefSeq, Sep 2011
Transcription factor p65 also known as nuclear factor NF-kappa-B p65 subunit is a protein that in humans is encoded by the RELA gene. RELA, also known as p65, is a REL-associated protein involved in NF-B heterodimer formation, nuclear translocation and activation.wikipedia

RELA

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Wikipedia RELA

Average Profiles of Modified Histones around the Summit of ChIP-seq Peaks

GM12878 - Snyder - ENCSR000EAG

loading

Legend

Proximal:
  • H2AFZ
  • H3K27ac
  • H3K27me3
  • H3K36me3
  • H3K4me1
  • H3K4me2
  • H3K4me3
  • H3K79me2
  • H3K9ac
  • H3K9me1
  • H3K9me3
  • H4K20me1
Distal:
  • H2AFZ
  • H3K27ac
  • H3K27me3
  • H3K36me3
  • H3K4me1
  • H3K4me2
  • H3K4me3
  • H3K79me2
  • H3K9ac
  • H3K9me1
  • H3K9me3
  • H4K20me1

Notes

Average histone modification profiles are shown for the [-2 kb, +2 kb] window around the summits of TF ChIP-seq peaks. Profile are shown separately for peaks that are proximal ([-1 kb, +1 kb]; ending in '-p') to an annotated transcript start site (TSS) and for peaks that are distal (>1 kb; ending in '-d') to all annotated TSS. TSS-proximal profiles are arranged such that the nearest transcript proceeds towards the right.

Motifs Enriched in the Top 500 ChIP-seq Peaks

GM12878 - Snyder - ENCSR000EAG

1.
448 / 500
8.5e-782
AGGGGATTTCCAAAG
small heat map img p-value: 0.00
pct_center: 0.45
pct_ratio: 2.25
2.
98 / 500
2.4e-30
AAAGAGGAACTGAAA
small heat map img p-value: 0.00
pct_center: 0.40
pct_ratio: 0.67
3.
6 / 500
2.4e-18
CCAAAATGAGTCATAGCTGCAAGCTAAGGG
small heat map img p-value: 0.09
pct_center: 0.09
pct_ratio: 0.66
4.
59 / 500
3.1e-14
AGGGGAAGTCC
small heat map img p-value: 0.00
pct_center: 0.34
pct_ratio: 1.71
5.
133 / 500
0.000029
CTGTGG
small heat map img p-value: 0.00
pct_center:
pct_ratio:
MEME output

Notes

The top 500 TF ChIP-seq peaks were used to identify enriched motifs de novo, using the MEME-ChIP suite of tools. Up to five motifs are reported (1 to 5) if they meet the criteria defined by our pipeline.

GM12892 - Snyder - ENCSR000EAN

1.
432 / 500
1.1e-737
AGGGGATTTCCAAGG
small heat map img p-value: 0.00
pct_center: 0.48
pct_ratio: 2.07
2.
98 / 500
1.4e-23
GGGAACTGAAA
small heat map img p-value: 0.00
pct_center: 0.32
pct_ratio: 0.67
3.
7 / 500
1.6e-16
AAATGAGTCATAGCTGCAAGCTAAGGGATT
small heat map img p-value: 0.45
pct_center: 0.10
pct_ratio: 0.59
4.
55 / 500
5.2e-13
GGGAAAGTCCC
small heat map img p-value: 0.00
pct_center: 0.41
pct_ratio: 1.49
5.
7 / 500
5.4e-12
GTGTGTGTGTGTGTGTGTGTGTGTATG
small heat map img p-value: 0.45
pct_center: 0.12
pct_ratio: 0.59
MEME output

Notes

The top 500 TF ChIP-seq peaks were used to identify enriched motifs de novo, using the MEME-ChIP suite of tools. Up to five motifs are reported (1 to 5) if they meet the criteria defined by our pipeline.

GM18951 - Snyder - ENCSR000EBD

1.
472 / 500
1.6e-829
AGGGGATTTCCAA
small heat map img p-value: 0.00
pct_center: 0.41
pct_ratio: 1.92
2.
71 / 500
3.5e-31
AGGAACTGAAA
small heat map img p-value: 0.00
pct_center: 0.27
pct_ratio: 0.65
3.
92 / 500
4.6e-14
GGGGATTTCCC
small heat map img p-value: 0.00
pct_center: 0.40
pct_ratio: 1.55
4.
84 / 500
4.9e-9
TGTGGTTT
small heat map img p-value: 0.00
pct_center: 0.19
pct_ratio: 0.91
5.
140 / 500
0.000028
GGGGGAAG
small heat map img p-value: 0.00
pct_center: 0.33
pct_ratio: 0.66
MEME output

Notes

The top 500 TF ChIP-seq peaks were used to identify enriched motifs de novo, using the MEME-ChIP suite of tools. Up to five motifs are reported (1 to 5) if they meet the criteria defined by our pipeline.

GM19193 - Snyder - ENCSR000EBM

1.
462 / 500
1.6e-808
AGGGGATTTCCAAGG
small heat map img p-value: 0.00
pct_center: 0.59
pct_ratio: 2.64
2.
130 / 500
5.5e-50
GGAACTGAAAC
small heat map img p-value: 0.00
pct_center: 0.36
pct_ratio: 0.79
3.
67 / 500
1.0e-7
TGCGTGGGGTGGGGGGAGGGA
small heat map img p-value: 0.08
pct_center: 0.40
pct_ratio: 0.58
4.
53 / 500
0.00085
GGGGAAGTCCC
small heat map img p-value: 0.00
pct_center: 0.55
pct_ratio: 1.86
5.
6 / 500
0.12
AAAATAAGTCACAGCTGCAAGCTAAGGGA
small heat map img p-value: 0.01
pct_center: 0.07
pct_ratio: 0.48
MEME output

Notes

The top 500 TF ChIP-seq peaks were used to identify enriched motifs de novo, using the MEME-ChIP suite of tools. Up to five motifs are reported (1 to 5) if they meet the criteria defined by our pipeline.

Binding of other histone marks at RELA peaks

GM12878 - Snyder - ENCSR000EAG

GM12878
Snyder
RELA
ENCSR000EAG
r=1.00

small heat map img

GM12878
Snyder
H3K27ac
ENCSR000AKC
r=0.39

small heat map img

GM12878
Snyder
H3K4me2
ENCSR000AKG
r=0.36

small heat map img

GM12878
Snyder
H2AFZ
ENCSR000AOV
r=0.33

small heat map img

GM12878
Snyder
H3K4me1
ENCSR000AKF
r=0.32

small heat map img

GM12878
Snyder
H3K4me3
ENCSR000AKA
r=0.31

small heat map img

GM12878
Snyder
H3K9ac
ENCSR000AKH
r=0.30

small heat map img

GM12878
Snyder
H3K4me3
ENCSR000DRY
r=0.17

small heat map img

GM12878
Snyder
H3K79me2
ENCSR000AOW
r=0.12

small heat map img

GM12878
Snyder
H3K9me3
ENCSR000AOX
r=0.04

small heat map img

GM12878
Snyder
H4K20me1
ENCSR000AKI
r=-0.02

small heat map img

GM12878
Snyder
H3K36me3
ENCSR000DRW
r=-0.02

small heat map img

GM12878
Snyder
H3K36me3
ENCSR000AKE
r=-0.03

small heat map img

GM12878
Snyder
H3K27me3
ENCSR000DRX
r=-0.07

small heat map img

GM12878
Snyder
H3K27me3
ENCSR000AKD
r=-0.07

small heat map img
10,000 randomly-selected peaks from a total of 17,036 (download )

GM12892 - Snyder - ENCSR000EAN

GM12892
Snyder
RELA
ENCSR000EAN
r=1.00

small heat map img
8,152 peaks (download )

GM18951 - Snyder - ENCSR000EBD

GM18951
Snyder
RELA
ENCSR000EBD
r=1.00

small heat map img
10,000 randomly-selected peaks from a total of 13,535 (download )

GM19193 - Snyder - ENCSR000EBM

GM19193
Snyder
RELA
ENCSR000EBM
r=1.00

small heat map img
5,280 peaks (download )

Notes

ChIP-seq peaks (left to right in the heatmap) for the current TF are sorted by descending TF ChIP-seq signal. The ChIP-seq signals of histone modifications are plotted for the genomic regions that correspond to the peaks of the current TF in the same order. The Pearson correlation coefficient (r) of the histone modification ChIP-seq signal with the TF ChIP-seq signal is shown.

legend
Binding of other TFs at RELA peaks

GM12878 - Snyder - ENCSR000EAG

GM12878
Snyder
RELA
ENCSR000EAG
r=1.00

small heat map img

GM12878
Snyder
EP300
ENCSR000DZG
r=0.75

small heat map img

GM12878
Snyder
EP300
ENCSR000DZD
r=0.73

small heat map img

GM12878
Snyder
TBL1XR1
ENCSR000DYZ
r=0.73

small heat map img

GM12878
Snyder
RUNX3
ENCSR000BRI
r=0.70

small heat map img

GM12878
Snyder
STAT3
ENCSR000DZV
r=0.69

small heat map img

GM12878
Snyder
RCOR1
ENCSR000DZC
r=0.67

small heat map img

GM12878
Snyder
CUX1
ENCSR000DYR
r=0.67

small heat map img

GM12878
Snyder
NFIC
ENCSR000BRN
r=0.65

small heat map img

GM12878
Snyder
FOXM1
ENCSR000BRU
r=0.64

small heat map img

GM12878
Snyder
IKZF1
ENCSR000EUJ
r=0.64

small heat map img

GM12878
Snyder
BHLHE40
ENCSR000DZJ
r=0.63

small heat map img

GM12878
Snyder
ATF2
ENCSR000BQK
r=0.62

small heat map img

GM12878
Snyder
SMC3
ENCSR000DZP
r=0.61

small heat map img

GM12878
Snyder
JUND
ENCSR000DYS
r=0.59

small heat map img

GM12878
Snyder
STAT1
ENCSR000DZM
r=0.57

small heat map img

GM12878
Snyder
RAD21
ENCSR000EAC
r=0.57

small heat map img

GM12878
Snyder
SP1
ENCSR000BHK
r=0.56

small heat map img

GM12878
Snyder
MXI1
ENCSR000DZI
r=0.56

small heat map img

GM12878
Snyder
ESRRA
ENCSR000DYQ
r=0.55

small heat map img

GM12878
Snyder
SREBF1
ENCSR000DYU
r=0.54

small heat map img

GM12878
Snyder
BCL3
ENCSR000BNQ
r=0.54

small heat map img

GM12878
Snyder
CEBPB
ENCSR000BRX
r=0.54

small heat map img

GM12878
Snyder
JUND
ENCSR000EYV
r=0.53

small heat map img

GM12878
Snyder
ELK1
ENCSR000DZB
r=0.53

small heat map img

GM12878
Snyder
MAX
ENCSR000DZF
r=0.52

small heat map img

GM12878
Snyder
TBP
ENCSR000DZZ
r=0.51

small heat map img

GM12878
Snyder
EBF1
ENCSR000DZQ
r=0.51

small heat map img

GM12878
Snyder
BCL11A
ENCSR000BHA
r=0.49

small heat map img

GM12878
Snyder
NFATC1
ENCSR000BQL
r=0.48

small heat map img

GM12878
Snyder
MAFK
ENCSR000DYV
r=0.47

small heat map img

GM12878
Snyder
BATF
ENCSR000BGT
r=0.47

small heat map img

GM12878
Snyder
MEF2A
ENCSR000BKB
r=0.47

small heat map img

GM12878
Snyder
ZNF384
ENCSR000DYP
r=0.47

small heat map img

GM12878
Snyder
CHD1
ENCSR000DZE
r=0.46

small heat map img

GM12878
Snyder
WRNIP1
ENCSR000EAA
r=0.46

small heat map img

GM12878
Snyder
SREBF2
ENCSR000DYT
r=0.45

small heat map img

GM12878
Snyder
PAX5
ENCSR000BHD
r=0.45

small heat map img

GM12878
Snyder
STAT5A
ENCSR000BQZ
r=0.45

small heat map img

GM12878
Snyder
TCF12
ENCSR000BGZ
r=0.44

small heat map img

GM12878
Snyder
IRF3
ENCSR000DZX
r=0.44

small heat map img

GM12878
Snyder
CREB1
ENCSR000BUF
r=0.44

small heat map img

GM12878
Snyder
MTA3
ENCSR000BRH
r=0.44

small heat map img

GM12878
Snyder
PML
ENCSR000BQM
r=0.44

small heat map img

GM12878
Snyder
EBF1
ENCSR000BGU
r=0.44

small heat map img

GM12878
Snyder
IRF4
ENCSR000BGY
r=0.42

small heat map img

GM12878
Snyder
RFX5
ENCSR000DZW
r=0.42

small heat map img

GM12878
Snyder
EP300
ENCSR000BHB
r=0.41

small heat map img

GM12878
Snyder
USF2
ENCSR000DZU
r=0.40

small heat map img

GM12878
Snyder
SIN3A
ENCSR000DYX
r=0.40

small heat map img

GM12878
Snyder
PAX5
ENCSR000BHJ
r=0.39

small heat map img

GM12878
Snyder
POU2F2
ENCSR000BGP
r=0.39

small heat map img

GM12878
Snyder
BRCA1
ENCSR000DZS
r=0.39

small heat map img

GM12878
Snyder
FOS
ENCSR000EYZ
r=0.39

small heat map img

GM12878
Snyder
NFE2
ENCSR000DZY
r=0.38

small heat map img

GM12878
Snyder
EZH2
ENCSR000ARD
r=0.38

small heat map img

GM12878
Snyder
E2F4
ENCSR000DYY
r=0.37

small heat map img

GM12878
Snyder
NRF1
ENCSR000DZO
r=0.36

small heat map img

GM12878
Snyder
POLR2A
ENCSR000EAD
r=0.35

small heat map img

GM12878
Snyder
TCF3
ENCSR000BQT
r=0.35

small heat map img

GM12878
Snyder
ELF1
ENCSR000BMB
r=0.35

small heat map img

GM12878
Snyder
YY1
ENCSR000EUM
r=0.33

small heat map img

GM12878
Snyder
ETS1
ENCSR000BKA
r=0.32

small heat map img

GM12878
Snyder
SPI1
ENCSR000BGQ
r=0.32

small heat map img

GM12878
Snyder
POLR2A
ENCSR000DKT
r=0.31

small heat map img

GM12878
Snyder
POLR2A
ENCSR000EYW
r=0.30

small heat map img

GM12878
Snyder
YY1
ENCSR000BNP
r=0.29

small heat map img

GM12878
Snyder
ZNF143
ENCSR000DZL
r=0.28

small heat map img

GM12878
Snyder
SRF
ENCSR000BMI
r=0.28

small heat map img

GM12878
Snyder
KAT2A
ENCSR000DNO
r=0.28

small heat map img

GM12878
Snyder
NFYA
ENCSR000DNN
r=0.26

small heat map img

GM12878
Snyder
MYC
ENCSR000DKU
r=0.26

small heat map img

GM12878
Snyder
SUPT20H
ENCSR000DNP
r=0.25

small heat map img

GM12878
Snyder
TAF1
ENCSR000BGS
r=0.23

small heat map img

GM12878
Snyder
CTCF
ENCSR000DZN
r=0.23

small heat map img

GM12878
Snyder
RXRA
ENCSR000BJD
r=0.22

small heat map img

GM12878
Snyder
EGR1
ENCSR000BMQ
r=0.22

small heat map img

GM12878
Snyder
SIX5
ENCSR000BJE
r=0.22

small heat map img

GM12878
Snyder
NFYB
ENCSR000DNM
r=0.22

small heat map img

GM12878
Snyder
POLR2A
ENCSR000BGD
r=0.21

small heat map img

GM12878
Snyder
RAD21
ENCSR000BMY
r=0.18

small heat map img

GM12878
Snyder
PBX3
ENCSR000BGR
r=0.18

small heat map img

GM12878
Snyder
MEF2C
ENCSR000BNG
r=0.16

small heat map img

GM12878
Snyder
CTCF
ENCSR000DKV
r=0.16

small heat map img

GM12878
Snyder
CTCF
ENCSR000AKB
r=0.16

small heat map img

GM12878
Snyder
POLR3G
ENCSR000EYU
r=0.15

small heat map img

GM12878
Snyder
NR2C2
ENCSR000EUL
r=0.13

small heat map img

GM12878
Snyder
ZBTB33
ENCSR000BHC
r=0.12

small heat map img

GM12878
Snyder
GABPA
ENCSR000BGC
r=0.11

small heat map img

GM12878
Snyder
CTCF
ENCSR000DRZ
r=0.10

small heat map img

GM12878
Snyder
ATF3
ENCSR000BJY
r=0.09

small heat map img

GM12878
Snyder
ZEB1
ENCSR000BND
r=0.09

small heat map img

GM12878
Snyder
EGR1
ENCSR000BRG
r=0.09

small heat map img

GM12878
Snyder
USF1
ENCSR000BGI
r=0.09

small heat map img

GM12878
Snyder
REST
ENCSR000BQS
r=0.08

small heat map img

GM12878
Snyder
ZZZ3
ENCSR000DNQ
r=0.07

small heat map img

GM12878
Snyder
REST
ENCSR000BGF
r=0.06

small heat map img

GM12878
Snyder
SRF
ENCSR000BGE
r=0.06

small heat map img

GM12878
Snyder
ZNF274
ENCSR000EUK
r=0.04

small heat map img
10,000 randomly-selected peaks from a total of 17,036 (download )

GM12892 - Snyder - ENCSR000EAN

GM12892
Snyder
RELA
ENCSR000EAN
r=1.00

small heat map img

GM12892
Snyder
POLR2A
ENCSR000EAM
r=0.45

small heat map img

GM12892
Snyder
POLR2A
ENCSR000BHZ
r=0.43

small heat map img

GM12892
Snyder
TAF1
ENCSR000BIB
r=0.40

small heat map img

GM12892
Snyder
YY1
ENCSR000BLT
r=0.36

small heat map img

GM12892
Snyder
PAX5
ENCSR000BJI
r=0.26

small heat map img

GM12892
Snyder
CTCF
ENCSR000DKY
r=0.24

small heat map img
8,152 peaks (download )

GM18951 - Snyder - ENCSR000EBD

GM18951
Snyder
RELA
ENCSR000EBD
r=1.00

small heat map img

GM18951
Snyder
POLR2A
ENCSR000EBC
r=0.34

small heat map img
10,000 randomly-selected peaks from a total of 13,535 (download )

GM19193 - Snyder - ENCSR000EBM

GM19193
Snyder
RELA
ENCSR000EBM
r=1.00

small heat map img

GM19193
Snyder
POLR2A
ENCSR000EBK
r=0.31

small heat map img
5,280 peaks (download )

Notes

Peaks (left to right in the heatmap) are sorted by the descending order of [-log10(q-value), -log10(p-value), TF ChIP-seq signal].

legend

Average Profiles of Nucleosomes around the Summit of ChIP-seq Peaks

GM12878 - Snyder - ENCSR000EAG

loading

Notes

Average nucleosome occupancy profiles in GM12878 and K562 cells are shown for the [-2 kb, +2 kb] window centered on the summits of the TF ChIP-seq peaks, separately for peaks that are proximal to an annotated transcription start site (red lines) and for peaks that are distal to all annotated transcription start sites (blue lines), as defined in the Histone section.

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